1. 郑雨军 《分子结构及其代数及其代数方法》（科学出版社 北京 2013）

2. Lifei Wang and Yujun Zheng, Autocorrelation function； Entangled trajectory molecular dynamics method, Chem. Phys. Lett. 563, 112(2013).

3. Zhaopeng Sun, Chungang Zhang, Shiying Lin, Yujun Zheng et al., Quantum reaction dynamics of the C（1D）+H2（D2）-CH(D)+H(D) on a new potential energy surface, J. Chem. Phys. 139, 014306(2013).

4. Feng Xu, Lifei Wang, Craig Martens, Yujun Zheng, H2O photodissociation in the first absorption band: Entangled trajectory molecular dynamics method, J. Chem. Phys. 138, 024103 (2013).

5. Liangjun Zhai and Yujun Zheng, Intramolecular energy transfer, entanglement, and decoherence in molecular systems, Phys. Rev. A 88, 012504 (2013).

6. Yonggang Peng and Yujun Zheng, Photon emission from a single molecule in a solid matrix: Phase-delay control, Phys. Rev. A 88, 013425 (2013).

7. Xiaodong Cui and Yujun Zheng

Geomitric phase in non-Hermitian quantum mechanics

Phys. Rev. A 86, 064104 (2012).

8. Lifei Wang, Craig C. Martens, and Yujun Zheng

Entangled trajectory molecular dynamics in multidimensional systems: Two-dimensional quantum tunneling through the Eckart barrier

J. Chem. Phys. 137, 034113 (2012).

9. Zhaopeng Sun, Shi Ying Lin, and Yujun Zheng

Adiabatic and non-adiabatic quantum dynamics calculation of O(1D) + D2 → OD + D reaction

J. Chem. Phys. 135, 234301 (2011).

10. Max C. Watson, Yonggang Peng, Yujun Zheng and Frank L. H. Brown

The intermediate scattering function for lipid bilayer membranes: From nanometers to microns

J. Chem. Phys. 135, 194701 (2011).

11. Yonggang Peng and Yujun Zheng

Statistical properties of blinking kinetics in single molecule

Chem. Phys. Lett. 516, 272–276 (2011).

12. Boran Han and Yujun Zheng

Nonadiabatic quantum dynamics in O(3P)+H2→OH+H: A revisited study

J. Comp. Chem. 32, 3520-3525 (2011): DOI:10:1002/jcc.21940

13. Huan Yang, Marlies Hankel, Yujun Zheng, and Antonio J. C. Varandas

Significant nonadiabatic effects in the C + CH reaction dynamics,

J. Chem. Phys. 135, 024306 (2011).

14. Meihua Ge and Yujun Zheng

Stereo-dynamics study of O + HCl → OH + Cl reaction on the 3A〞, 3A′, and 1A′ states,

Theor. Chem. Acc. 129, 173 (2011).

15. Hongbin Yao and Yujun Zheng

Quantum control of a molecular system in an intense field via the

selective population of dressed states

Phys. Chem. Chem. Phys. 13，8900 (2011)

16. Dongsheng Wang and Yujun Zheng

Quantum interference in a four-level system of a 87Rb atom: Effects of spontaneously generated coherence

Phys. Rev. A 83, 013810 (2011)

17. C. C. Martens, A. Donoso, and Yujun Zheng

Quantum Trajectories in Phase Space in Quantum Trajectories （Edited by Pratim Kumar Chattaraj， CRC Press 2010，ISBN: 978-1-4398256-1-7）

18. Yujun Zheng

Multiphoton selective excitation and analytical control of small molecules in intense laser fields: an algebraic model

In Laser Pulse Phenomena and Applications (INTECH 2010),

ISBN: 978-953-307-405-4

19. Hairan Feng, Ping Li, Yujun Zheng and Shiliang Ding

Lie Algebraic Approach to Dynamical Entanglement of Vibrations in Triatomic Molecules

Pro. Theo. Phys. 123, 215 ( 2010)

20. Boran Han, Huan Yang and Yujun Zheng

Quasi-classical trajectory study of the reaction H(2S)+NH→N(4S)+H2

Chem. Phys. Lett. 493, 225 (2010)

21. Baiping Han and Yujun Zheng

Control photon emission from a single molecule source with a rf field

Chem. Phys. 370, 151–158 (2010)

22. Baiping Han，Ziwu Ji and Yujun Zheng

Photon Counting Statistics of Single Molecules in Solid Matrix

J. Chem. Phys. 130, 244502 (2009).

23. Yonggang Peng, and Yujun Zheng

Coherent Optical Spectroscopy for Single Quantum Dot through Photon Counting Statistics

Phys. Rev. A 80， 043831（2009）

24.

25.

26. Ashu Wang，Yujun Zheng，Craig C. Martens, Weiyi Ren,

Quantum tunneling dynamics using entangled trajectories: general potentials

Phys. Chem. Chem. Phys. 11， 11588 (2009)

27. Craig C Martens, A. Donoso and Yujun Zheng,

Quantum Trajectories in Phase Space,

CCP6 booklets

28. Yujun Zheng,

ingle molecule kinetics under stochastic gating,

J. Chem. Phys. 129, 246102 (2008).

29. Yan Liu, Yujun Zheng, Weiyi Ren and Shiliang Ding,

Dynamical entanglement of vibrations in small molecules through an analytically algebraic approach,

Phys. Rev. A 78, 032523 (2008).

30. Yujun Zheng,

Comment on coherent control of a V-type three-level system in a single quantum dot,

Phys. Rev. Lett. 101, 049701 (2008).

31. Baiping Han and Yujun Zheng,

Control of the photon emission of single molecule in a solid matrix,

Phys. Rev. A 78, 015402 (2008).

32. Yonggang Peng and Yujun Zheng,

Photon statistics of V-type three levels system in single quantum dots,

Appl. Phys. Lett. 92, 092120 (2008).

33. Hairan Feng, Yan Liu, Yujun Zheng, Shiliang Ding, Weiyi Ren,

Analytical control for small molecules by intense laser pluses in an algebraic model,

Phys. Rev. A 75, 063417(2007)

34. Yonggang Peng, Yujun Zheng, Frank Brown,

Single molecule photon emission statistics of driven three-level system,

J. Chem. Phys. 126, 104303 (2007)

35. Y. Qi, D. Guan, Y. Jiang, Yujun Zheng, C. Liu,

How do oxygen molecules move into silver contacts and change their electronic transport properties?

Phys. Rev. Lett. 97, 256101 (2006)

36. G. Bel, Yujun Zheng, Frank Brown,

Single molecule photon counting statistics for quantum mechanical chromophore dynamics,

J. Phys. Chem. B 110, 19066 (2006)

37. Yujun Zheng,

Comment on Time-dependent general quantum quadratic Hamiltonian system,

Phys. Rev. A 74, 066101 (2006)

38. Yujun Zheng,

Quantum transition state theory for the full three-dimensional H+H2 reaction,

J. Chem. Phys. 122, 094316 (2005)

39. Yujun Zheng, Frank Brown,

Single molecule photon emission statistics in slow modulation limit,

J. Chem. Phys. 121, 7914 (2004)

40. Yujun Zheng, Frank Brwon,

Single molecule photon emission statistics for non-Markovian blinking,

J. Chem. Phys. 121, 3238 (2004)

41. Yujun Zheng, Frank Brown,

Photon emission from driven single molecule,

J. Chem. Phys. 119,11814 (2003)

42. Yujun Zheng, Frank Brown,

Single molecule photon counting statistics via generatlized optical Bloch equation,

Phys. Rev. Lett. 90, 238305 (2003)

43. A. Donoso, Yujun Zheng, C.C. Martens,

Simulation of Quantum process using Entangled trajectory molecular dynamics,

J. Chem. Phys. 119, 5010 (2003)